Van Stipdonk, Benjamin J. Bythell, Jos Oomens, Alan C. Hopkinson, and K.W. What is the structure of b2 ions generated from doubly protonated tryptic peptides?. Two different statistical methods were used to identify sequence-dependent fragmentation patterns that could be used to improve fragmentation models incorporated into current peptide sequencing and database search algorithms. MassWiz: A Novel Scoring Algorithm with Target-Decoy Based Analysis Pipeline for Tandem Mass Spectrometry. Emerging methods in proteomics: top-down protein characterization by multistage tandem mass spectrometry. Model of ion intensity from tandem mass spectra for improved peptide identification and simulation. Genes Dev 26:1376–1391Rando OJ (2012) Combinatorial complexity in chromatin structure and function: revisiting the histone code.

Radical-driven dissociation of odd-electron peptide radical ions produced in 157 nm photodissociation. Journal of the American Society for Mass SpectrometryValerie J. Carabetta, Tuo Li, Anisha Shakya, Todd M. Greco, Integrating Lys-N proteolysis and N-terminal guanidination for improved fragmentation and relative quantification of singly-charged ions. Automated Neutral Loss and Data Dependent Energy Resolved “Pseudo MS X by DNA damage response protein MCPH1. Chembiochem: Eur J Chem Biol 12:264–279Arita K, Isogai S, Oda T, Unoki M, Sugita K, Sekiyama N, Kuwata K, Hamamoto R, Tochio H, Sato M et al (2012) Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1. Bed and Breakfast. Epigenomics 5:439–452Horton JR, Upadhyay AK, Qi HH, Zhang X, Shi Y, Cheng X (2010) Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases. A Data-Mining Scheme for Identifying Peptide Structural Motifs Responsible for Different MS/MS Fragmentation Intensity Patterns. MSn characterization of protonated cyclic peptides and metal complexes.

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Mass spectrometry has married statistics: uncle is functionality, children are selectivity and sensitivity. Henry Lam, Eric W. Deutsch, James S. Eddes, Jimmy K. Eng, Nichole King, Stephen E. Stein, Ruedi Aebersold. Nat Struct Mol Biol 18:769–776Jacobson RH, Ladurner AG, King DS, Tjian R (2000) Structure and function of a human TAFII250 double bromodomain module.

Review of factors that influence the abundance of ions produced in a tandem mass spectrometer and statistical methods for discovering these factors. Découvrez tous les films et séries de la … Article Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. Gas-phase peptide fragmentation: how understanding the fundamentals provides a springboard to developing new chemistry and novel proteomic tools.

The role of proton mobility in determining the energy-resolved vibrational activation/dissociation channels of N-glycopeptide ions. J Proteome Res 9:5827–5836Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution.
Jacques Chambon, né le 9 octobre 1942 et mort le 16 avril 2003 (à 60 ans), est un enseignant, critique littéraire, anthologiste, éditeur, directeur littéraire, éditorialiste, traducteur et préfacier français spécialisé dans la littérature de science-fiction et dans une moindre mesure en fantasy et fantastique Biographie. Mass-Spectrometry Based Characterisation of Infant Whole Saliva Peptidome. Chuan-Le Xiao, Xiao-Zhou Chen, Yang-Li Du, Xuesong Sun, Gong Zhang, and Qing-Yu He . Effect of iTRAQ Labeling on the Relative Abundance of Peptide Fragment Ions Produced by MALDI-MS/MS. Activation of some variant surface glycoprotein (VSG) genes involves a duplicative transposition to an expression site, which completes the gene by addition of a mini-exon coding for the 5′ 35 nucleotides of VSG mRNAs. Mechanistic Insights into the Multistage Gas-Phase Fragmentation Behavior of Phosphoserine- and Phosphothreonine-Containing Peptides. Journal of the American Society for Mass SpectrometryDe novo peptide sequencing using exhaustive enumeration of peptide composition. Targeted data-independent acquisition for mass spectrometric detection of RAS mutations in formalin-fixed, paraffin-embedded tumor biopsies.
Reference Manager Influence of charge distribution on the discrepant MS/MS fragmentation of the native and oxidized FMRF: evidence for the mobile proton model.

Comparative Studies on the Discrepant Fragmentation Mechanisms of the Gly-Asp-Gly-Arg and Arg-Gly-Asp-Gly: Evidence for the Mobile Proton Model. PRIMA: PEPTIDE ROBUST IDENTIFICATION FROM MS/MS SPECTRA. ‘Information-Based-Acquisition’ (IBA) technique with an ion-trap/time-of-flight mass spectrometer for high-throughput and reliable protein profiling. Nat Chem Biol 6:283–290Han Y, Garcia BA (2013) Combining genomic and proteomic approaches for epigenetics research.

Papers 1999 ⓘ Translated by Jacques Chambon. De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio. Biochimica et Biophysica Acta (BBA) - Proteins and ProteomicsQifei Xu, Wansong Zong, Longping Shi, Rutao Liu. Kenny Helsens, Evy Timmerman, Joël Vandekerckhove, Kris Gevaert, Lennart Martens.